PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04383 (466 amino acids)

SeqID: SMc04383 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04383
MKENSFVSADDIRSAFSAAMSLMYREEVPAYGTLMELVARVNGETLSADATLKGRLEATD
SLERISEERHGAIRLGTPAELSMMRRVFAVMGMYPVGYYDLSTAGVPVHSTAFRPVGDAA
LKHNPFRVFTSLLRLDLISDEALRAEAEAILKERRIFTSGAVELTEKAERDGGLDKADAE
RFVAEVLETFRWHDEANVSAGMYERLHDAHRLIADVVSFKGPHINHLTPRTLDIDRVQAL
MPEYGIAPKAVVEGPPTRKCPVLLRQTSFKALEEPVSFRDSDGSWKTGSHTARFGEIEQR
GIALTPKGRGLYDRLLDESRKIVRPAADGSNAREYEAALAQVFEAFPDSWAELREAGLGY
FSYSLTDKGRRTKLPGRRDLNSLIADGLVQFDPIVYEDFLPVSAAGIFQSNLGDGAQQEF
EASPNQKRFETDLGVAVLNEFDHYAGIEQASIEGCLKALTAAMAAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory