PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_0009 (400 amino acids)

SeqID: Synpcc7942_0009 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598721: argininosuccinate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_0009
MGRAKRVVLAYSGGVDTSVCIPYLKQEWGVEEVITLAADLGQGDELGPIRQKALDSGAVE
SLVIDATAEFVRDYAFPAIQANSLYEGRYPLSTALARPLIAKLLVEAAAKYGADAVAHGC
TGKGNDQVRFDVSIAALNPDLKVLAPAREWGMSREETIAYGERFGIPAPVKKSSPYSIDR
NLLGRSIEAGPLEDPLHEPLEEVYALTKAIANTPDEPAYIELGFDQGLPVTLNGQALAPV
ALIQQLNAIAGEHGIGRIDMIENRLVGIKSREIYETPALLVLIQAHQDLESLVLTADVSQ
YKRGIENSWSNLVYNGLWYSPLKAALDAFIQQTQQRVTGTVRLRLFKGNATVVGRSSEQS
LYSPDMATYGAEDRFDHKAAEGFIYVWGMPTRIWSQTHRA