PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_0150 (388 amino acids)

SeqID: Synpcc7942_0150 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2495587: Biofilm PGA synthesis N-glycosyltransferase pgaC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_0150
LSRGAIASYAGQQFASEPQWLALPFLSLVIPTFNEAENIQPLLLQLNELLDRALADRYEL
IVVDDDSPDRTWALAEQLQPKLPMLTVLRRQGDRGLATAVVYGWQRAQGEILGVIDGDLQ
HPPETLLALIQTMQAGADLAVASRNVSGGGVSDWSVWRRLGSRGAQLLGLLILPEVLGRV
SDPMSGYFMVRRSRLDLPSLQPRGYKILLEVIAKGQIRQIREVGFIFRERSQGESKVTAR
EYWHYLQHLCSLRLQRWESARFLKFVGAGATGVIVDSVVLYLLHDPSRLGWPLLLSKFIA
AEVAILNNFVFNEFWTFGDLARGSQRRYWPRRFLKFNLICSLGIFLNLLILSLLVEGLKL
HYLPSNWVAIAVVTLWNFWLNRKLTWVG