PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_0246 (359 amino acids)

SeqID: Synpcc7942_0246 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 3182887: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_0246
MKAILLSGGPMPAIASRFLLVLLCFLPLAACRSLGGNETESNSRLNQVQARGKLLCGVEG
RLPGFSFLDSQGNYSGLDVDICKAIAAALFNDPKAIEYRSLDSVERFPALASGEVDLLSR
NTTWTLSRDAKGGNNLEFAPTTFYDGQGLMVRRNSGIQSLQDFQGKSICVETGTTSELNL
ADTMRELGVQYQEIKFPNSDANYAAYAQGRCEGVTSDRSQLAARRTTLSDADQHQLLDAV
ISKEPLSPATLNNDSPWFDVVKWVVNATIQAEEFGITQANIDQFKTSKNPEIRRFLGLEG
ELGQQLGLSNDFAYRAIKAVGNYGEIYERNVGQQSPLKLNRGLNQLYKNGGLLYSPPFR