PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_0534 (641 amino acids)

SeqID: Synpcc7942_0534 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 62297827: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_0534
MCGIVGYIGTQPASHILLEGLRQLEYRGYDSAGIATLWDHQLQIVRAEGKLHNLQAALQN
HDSPAHLGIGHTRWATHGKPEVRNAHPHKDMSGLVAVVQNGIVENYRELREALQAEGIEF
VSDTDTEVIPNLVARHFRQLAAAGSAPDSRLLEAVRLAVQELEGAYAIAVLCVDAPDEIV
VARQQAPLVIGFGQGEFFCASDTPAIINHTRAVVTLENGEMARLTPLGVEIFNFQGDRLR
KQPRLLSGTSLLAEKQGFRHYMLKEIYDQPGVVRSWLSTHLNDNWRADAADEPAQVAPYP
HAQTPVILNLPDELLNDLEQVQILACGTSWHASLVGRYLLETLAGVPTQVYYASEFRYAP
SPLVRNTLTIGVTQSGETADTLAALEKEGERRSGLGPEFAPRLLGITNRSESTLAHVVPH
ILDIQAGIEVGVAATKTFLGQVLAFYGLAIDLAYRRSSQSHEKLEALIAGLKRIPDQIEQ
LLREQDGAIESLAHQFTETQDFIFMGRGINFPIALEGALKLKEISYIHAEGYPAGEMKHG
PIALLDSKVPVVAIAVPGSVYDKVLSNAQEAKARDARMIGVIPDGPDANMFDHYLWVPIV
DELLSPLLTVVPLQLLSYHIAALRGLDVDQPRNLAKSVTVE