PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_1596 (245 amino acids)

SeqID: Synpcc7942_1596 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708001: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.76
    Periplasmic            0.24
    OuterMembrane          0.00
    Extracellular          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_1596
MAGMSFLPSPFVLITGASSGIGAATAHAFAQAGWSLLLLGRDRGRLQSVAESARSQGAAA
VATYSLDLTNLTAIGPAIAQLVEQFGVPDVLINNAGTAQTGPLATLSLSDLECIFALNVH
SPLLVVQALLPGMRQRQRGLILNVASIAAQQAFPDWGAYCASKSALAAWSRVLAAEERSH
GIRVSLICPGSVDTALWDQPSVGANFDRQAMLRPETVAQVLLQVATLPETAVVDELTLMP
NAGTF