PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_1653 (398 amino acids)

SeqID: Synpcc7942_1653 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 462590: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_1653
MEVSTGYLPQAVFAPADQGHPAPRVFISPQRYIQGRGVLRSVGRYLSLLQAKRAGLLMSQ
RSSRNEGDLLLAGLRSAGVDAVVSTFQGECTTDEITAHTTAFSKERIDCVIAAGGGKCID
TGKAIAFRLGIPVVVVPTLASNDAPCSALSVLYSPEGISQGVEFYPNSPAIVVVDTDIIA
AAPERYLVAGMGDAMATWYEASVCLRNPAAVTTVGARPTLAACAIGEVCAHTLFQEGCAA
AAAVASKTVNDALESVVEANTLLSGLGFESGGLAGAHAVAQSYTAIPHVRANYLHGEMVA
MGTLAQLMMESRPKEATRVAEFFAAVGLPIHLGQLSLSSSDTQALEIVSEASLGFPFVGN
MPMKITPEFVKSAILDAHHLGLSISEQIGDSAYRHLQG