PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_1894 (359 amino acids)

SeqID: Synpcc7942_1894 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 115123: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_1894
MIGYIILLVCTIALFALFCVGLNLHWGYTGLLNFGHVAFLLIGAYSVSLLAQQGWPLWLA
AIAGVTLAALLGLVMGVASLRLSQDYLGIVTVGLAEVLRIFVQNETGLTQGSFGVQAYPI
ILQGWEPPIWQTHLLVVGLLAIAAWGYWQLWQWWRSSASRGKHWLAIVALGSSLIVLPPA
ALGLADYERYPRSGQMLLLLGALWLTVAAVDRLVRSPWGRVLKAIREDETVAIALGKNVL
SYKLQSLALGGAIAGLAGVFYAWQLTAIYPDNFRPQLTFDVWTMLVLGGTAHRFGPVLGA
AVFWLYDSLTRFLLPAILPLDGSQIGALRIALVGLLLMALMIWRPQGILGRREELSLGR