PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_1896 (414 amino acids)

SeqID: Synpcc7942_1896 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21903387: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_1896
MQAAWQEISGGLTAPRGFQAAGITAGLKASGQPDLALIVSESDAIAAAVFTTSQVRAACV
DFSRQQLDGNSIARAILCNSGQANAATGDQGWSDAVESAEQLAQALQIPSHQVLVASTGV
IGQRIKMEALRTGIPQAIAALSPEGGPAAAQAILTTDLVAKQIALELPLGDRTVRIGGIA
KGSGMIHPNMATMLSFITCDAAVSPQLWQEMLSRAVDRSFNQITVDGDTSTNDCVFALAN
GQSRTPAITERGPIADQLEAMLTAVCQHLAKAIARDGEGATCLIEVQVKGTADDAAARAI
ARTIAGSSLVKSAIFGRDPNWGRIAAAAGRAGVQFNSENLGVRLGEFELLRNGQPLPFDR
NAASQYLRDRAAGAYLQDDTVLIQVDVGAGTGQGVAWGCDLSYDYVRINAEYTT