PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_2079 (393 amino acids)

SeqID: Synpcc7942_2079 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2492614: Acetate kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_2079
LQLLTFNAGSSSYKLSGFEITTAAEQTDPVWQVQIDWKTDRAATLTQPGQPVQMLDSSDR
RAWLEIALETLPDRSAIAAVVHRVVHGGQQQAPAVVTPELKATIAAAANLAPLHNPLNLA
GIEQMEQLFGLAMPQIAVFDTAFHQQMPVAAAIYGGPYHWWEQGYRRYGFHGISHQYLAE
RCAQLSDRSLSNLQLVTAHLGNGCSLAAIRNGHSVDTSMGFSPLEGLVMGSRSGTVDPGL
LLHLLQQPDCSPSQLSTVLNQQSGLLGLSGRSNDVRALAIAADAGDQRSQLALAAFTHSL
RRHLGAMLASLTRLDALVFAGGIGENYRSLWPAVCEHFAGMPIRLDPEAMAVAGDRRIST
PDSAITVWVIHSREDWQMVQLALPLLRSPQSFN