PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_002720845.1 NCBI__GCF_000015985.1:WP_002720845.1 (633 amino acids)

SeqID: WP_002720845.1 NCBI__GCF_000015985.1:WP_002720845.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 123084542: Cell division protease ftsH homolog]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_002720845.1 NCBI__GCF_000015985.1:WP_002720845.1
MGNARNIAFWVVLFLLILALFNLFSGGQTTSSSRTISYSDFIARVDNGEVSSVTLDGERV
MVRGKDGTQYVAIKPQGEEVTDRLINHGVEVRAEAQEQSGFFSLISLWLPFLVLIGIWIF
FMNRMQGGGRGGAMGFGKSRAKLLTEKQGRVTFDDVAGIDEAKEELEEIVEFLRNPQKFS
RLGGKIPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFE
QAKKNAPCIVFIDEIDAVGRARGVGIGGGNDEREQTLNQLLVEMDGFEANEGVIIVAATN
RKDVLDPALLRPGRFDRTIHVPNPDIKGREKILSVHARKVPLGPNVDLRLIARGTPGFSG
ADLMNLVNEAALLAARVGRRFVTMDDFENAKDKVMMGAERRSMVLTADQKEKTAYHEAGH
AIVGLNLPKCDPVYKATIIPRGGALGMVVSLPEMDRLNMHKDEGKQKIAMTMAGKAAEII
KYGEEAVSSGPAGDIQQASALARAMVMRWGMSDVVGNIDYAEAHEGYQGNTAGFSVSAET
KKMIEAEVKRLIDEGYQTAYRILTEKSEEFERLAKGLLEYETLTGDQIRRVIAGEPIDSD
DDADRPVGGGSVAAIPKTRPKVIKADGGLEPSV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory