PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011372529.1 NCBI__GCF_000012965.1:WP_011372529.1 (759 amino acids)

SeqID: WP_011372529.1 NCBI__GCF_000012965.1:WP_011372529.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011372529.1 NCBI__GCF_000012965.1:WP_011372529.1
MSKNYIVGFPRIGEQRELKKVLEEFWAKKCSFEDVQTVAKELKKRHWEYQRDAGIEFISS
NDFSLYDNMLDTSVMLGAIPKKFKNLKNEELYFAMARGNASSVAMEMTKWFNTNYHYIVP
ELEPSDSYKLDASKIVNEYNEAKSLGIKTKINIIGPITYLGLSKRADGGDTYELWGKIVP
IYEELVKTIATLDDEITIQIDEPIFVKEPNTKVLSLIKPTYDRLCAVSPNIKIAVVTYFE
HSNEATKVLVHTPIWALGLDFLYGDENLNSLEIIASSGKKVIAGVVDGRNIWRCDIAKTI
ALLQNISKIVKKENILLSSSCSLLHTPFTLKYEDKMDKDIKEWLSFALEKLSEISLISKI
FFDGEGSINEREKEALINNEEANKSRKNSPLIHDRAVQERVQNHTKFQRDGISSERIALQ
REIFGYKDLVTTTIGSFPQTPELRRTRSDFKNSLISRDEYEKEIKKYIDECVLFQEECGL
EVLVHGEPERNDMVEYFGEQLSGYGFTQNGWVQSYGSRCVKPPFIYGDISRPKPMTVDWT
TYAQSKTERIMKGMLTGPVTILNWSFVRDDMPRGEVSKQIAVALSDEIDDLQRAGIKIIQ
VDEAAFKEGYPLRNEKIKIYEAWATRDFKIAVGSAKKETQIHTHMCYSEFNDIINTIEDM
DADVITIETARSGNELLKIFKKVGYTKEVGPGVYDIHSPRIPSVEEIVSQIELLLEVLPK
EQLWINPDCGLKTRKWEEVKPSLKNMVEAVSIIRKKLSV