PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011382479.1 (1603 amino acids)

SeqID: WP_011382479.1 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            7.33
    CytoplasmicMembrane    2.64
    Periplasmic            0.03
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011382479.1
MEISAYLDRRIAELSEPLAKVGAGRLIRAYAAGIPLADLAEADPELVYGAALGLFAFLRD
RQPGAPSIRVFDPDLDRHGWVSSHSVVEIINDDMPFLVDSVAMELARRGIKVHLLVHPVL
RVDRDGAGTLVQVAANGSGSTPESVMHVEIDRQPAEVQTQLAESLAEVLAQVRLAVADWR
RMLETLWAGVTEFENASAKVPADEKQEALAFLEWLADNHFTFLGYRRFDLAKGVVADPAS
GLGILSDAGAHVFDDTVTLADMPAELRAFVQRPDPLMVTKSARHAVIHRPVRMDIIGLKQ
FDAKGKVVGLHAFLGLFTSAAYNDRPAQIPLLRRKIARVEARADFNKSGHDAKALINILE
TYPRDELFQVSEDALFEISIGILHLQDRQRVAVFLRNDEFERFVSCLVFVPRDRYDTPLR
LAVTAMLEEALGGTLDTFYTQVADLPLARLHFIIRTTPGHLRRVDALALEVRIADAARTW
HEHLQDALIQTHGEAAGLALARRWGKGFPASYRESHGALAAVADVGRIQTASGGDIVLNL
YRPVEAEPRQGRLKLYRSGQPVPLSGILPMLEAMGLVVIAEVPHEIEPDSGGSTVWIHDF
EVESADGAPLDVAERRELFHDALAAVWRGDADSDGFNRLVLSAGLSWREIMVLRAYTKYL
RQTGITYSQTYIEQALGGNADMATGLVRLFLASFDPKGRSGDASEAEAALLAGLDKVVSA
DDDRILRRFLNLIRSTLRTNYFQTDGAGKPKAYLSFKLDSRQVDDLPAPRPLVEVFVYSP
RVEAIHLRGGKVARGGIRWSDRREDFRTEILGLMKAQMVKNAVIVPVGAKGGFVVKKPPA
AGGREAYMAEGIECYKTLMRGLLDLTDNLVPEGVRPPPDVLRRDGDDPYLVVAADKGTAT
FSDIANAVSLEYGHWLGDAFASGGSQGYDHKKMGITAKGAWVAVERHFREMGIDTRSEDF
TVIGVGDMSGDVFGNGLLRSPHAKLVAAFNHAHIFLDPDPDPQKTFTERERLFNAVKAWP
DYDLSTISPGGGIWPRSAKSIPISPQAKARFGIEANSLTPTELIRTLLKAPVDLLFLGGI
GTYVKASGESNADAGDRANDTLRVNGSEVGARVVGEGANLGFTQLGRIEYAISGAGGGGG
RIDTDAIDNSAGVDCSDHEVNIKILVNDLVAAGDLTPKQRDKLLAEMTGEVGALVLRDNY
LQTQAISMLEAQGADLLDAEARFMRLLEKGGRLDRAIEFLPTDETLTERAARKQGFTRPE
LAVLLAYGKIWLYDHILASELPDDPFMAIDLTNYFPTQLRDRFGHEIQRHRLRREIVATV
VTNSIVNRVGGAFVSELMETTGHPPAQVARAYIVARDAFRMREVWRAIEELDGKVPAAAQ
TAMQNEANRLVERATLWVLRSMPSPFALGAGISELSPGVKALEGAVPAILPPDAAAAVLA
RIDHFVGQGVPHDLAQRVGNLIVLASAADILRIATRQNLSIETAGRLYFAVGARFSLGWL
RASAEKLSGRGHWLKLAAAAAIEDLYGHQRDITSVVAASYPDLEPDAAVQAWLEANRAAV
ERAETLLAELKAASHIDLSMIMVANRQLRTLTESGVAVSGGNG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory