PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011382484.1 (464 amino acids)

SeqID: WP_011382484.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011382484.1
MTTLIPVILSGGAGTRLWPLSRELMPKQLLKLTGERTLLQDTAGRLGVPPVVVCNVEHRF
IVAEQLREVGLEPRAVVIEPVGRNTAPAAAVAALMLADSDPDALMLLMPSDHLIADVPAF
HRALEAAVPLAEAGRLVTFGIPPTNPNTGYGYIKRGKALDGGFEVERFVEKPDLATAETY
VASGDYTWNSGIFLLPVRLFLDELSRHAPGMAESCKAALDQGRSDLFFFRLDDKAFAAIA
GQSIDYAVMEKSDKVAVVPVDMGWSDIGSWSALWQETSHDADGNAIQGDVLALESSGCYL
RSQGRLVAAVGLKDMVVIATDDAVLVADKARDQEVKAVVEALKREGRPEATQGTRGWRPW
GWYQTVEQGERFKVKHIHVDPGAKLSLQKHWHRSEHWVVVRGTALVTCGDNTFVLRENES
TFIPAGSNHRLENPGKVPLRLIEVQSGEYVGEDDIVRIEDDYGR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory