PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011382489.1 (585 amino acids)

SeqID: WP_011382489.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598655: probable glutamine amidotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011382489.1
MCGLAAIFAYQSKAPPVQGDELAVVRDAMRLRGPDGAASWISPDGRVGLAHRRLAIIDLS
PAGAQPMTSADGRLALVFNGEIYNYRALRAELESLGTVFRSHTDTEVILEGWRHWGRDVL
SRLRGMFALALWDNEARGMLLARDPLGIKPLYMADQGGCLRVASQVKALLAGGSVDTTPD
PAGHAGFFLWGHVPEPHTLYRAIQALPAGSWLWRDEAGGRDEGRFFDLGQELAAADEKSF
DIDILHEALADSVKAHLEADVPVGLFLSGGLDSTTLAALVREAAEGPVKSITLGFSEFQG
GAQDEVPLAERVAAHYRLNHTTSRVTAADFAQARDQLLAHMDQPSVDGVNTWFVARAAAR
SGLKVALSGLGGDELFAGYDSFAQIPRLAGALGPLRPLRGLGTLLRMALSPWIGRFASPK
TAGLLEWGTSFGDAYLLRRALFMPWELPRVMDSDMAREGWKALQAPSRLEAATAGISSAR
LKVSALEAGFYMRNQLLRDSDWAGMAHSLEIRVPLVDVDLLRAVLPLVRGPRPPGKRDMA
ACARPALPPELLDRPKTGFFVPVAQWLGASSLRGWARQVHGAFQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory