PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011382566.1 (639 amino acids)

SeqID: WP_011382566.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597280: probable asparagine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011382566.1
MCGIFGMVRGGGRPVESNVLAAMKTALHHRGPDGNGIFAEGPVGLGNTRLAVVDTAGGSQ
PVIDPSSGAAIVYNGELFNHLELRAELESVGWCFRTHSDTEVVLAAFCVWGEDCVLRFNG
MYAFAVFDPKARRVFIARDPAGIKPLYLTETADGLAFASEAKALLPIAGRRPDWQALWGY
LTYGYMAPDCSPFAGITKFPAGSLAWIDLELPAARLAVRPYWQPRFGCGAPLAEGEAVDR
LDALLSQAVKHELMSDVPVGLFLSGGLDSSAVAYYAARRHGQAISSFGLAFEETTHDESN
DARTVARHLGIEHKELMFSPALVREGLRRVTETMDEPFGDSTVVPLLMLSRFAREHVTVV
LTGWGGDEVLAGYPTLTAHRVASLYRRLPGMLAHGLVPALVDRLPVSDKYLSFEFKARRF
LRGMKLTPEQQHFLWMGYFDDAFKHALLTPDVTAQVAQQDSLAHFAGMAAGMAEPTLTDR
IMHLDFRYFLHGNGLFQADRMTMAASLEARVPLLNKQMLDFALPLPAGLKMAGGTPKGLL
KKALAPHLPPAILSKPKKGFGPPSGHWVRSVFGPLLDHLFSRERIEAQGILNHATVARLL
AEHRELKADHGRTLWALMSLQLWYDRFILDQASPLERAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory