PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011382585.1 (314 amino acids)

SeqID: WP_011382585.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011382585.1
MSIPASSDPVRLALIGAGRWGRNYIRTIAGLPGAALVRLASSNPESHVLAPPGCVVDAHW
RTSIAAPEVEAVIVSTPPASHAEITLAAIAAGKAVLVEKPLTLDLGEADAIARAAREAGA
MVWVEHTQLFNPAWTALKAALTSIGPIRAIRSEAGNHGPYRKGGVPMLWDWGAHDIAQTL
DLMGRDPNRVSAAWAARGEKEGGDSGDVTLTLAFDGIEARIRLCNTMDKARRFAVHGERG
VLLFDDTAADKLTRHPSCPDFGWPAGKGDTLAIDSEMPLARAVRLFAQAVRTPRPGPSPL
DLGLRVVRALAACG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory