PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011382978.1 (553 amino acids)

SeqID: WP_011382978.1 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011382978.1
MPILELKGVAKSYGASSVLRDIDLEIEDGEFIAILGFSGSGKTTLVSLMAGLIKPDAGEV
LLRGKPVDGPGADRGVVFQSYSLMPWLTVEGNIALAVDAVMPDASKAERKARVAKYIGMV
GLSHAAERRPSELSGGMRQRVAVARALAMSPDILLLDEPLSALDALTRAKLQDEIEAIWE
QEKKTVILITNDVDEALLLADRIIPLNPGPGATFGPSFKVNLPRPRDRAAVNSDPDFKRL
RAEVTEYLMAVGVERGGESGETRILPNVAPISFGGPPKAYREAGQVNNPDRYVEFSRVKK
IYPTPKGPLTVVDGFDLKMHQGEFISLIGHSGCGKSTVLTMTAGLTDVSEGGVILDGREV
SEAGPDRAVVFQAPSLFPWLTALQNVALGVDRVYPHASPAERLDIVSYYLERVGLGDSMD
KKASDMSNGMRQRVGIARAFALSPKLLLLDEPFGMLDSLTRWELQEVLMEVWTRTRVTAI
CVTHDVDEAILLADKVVMMTNGPNARIGKVLNVDIPRPRTRRALLEHPRYYEYRAEVLNF
LDEYETGAHAKAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory