PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011383521.1 (783 amino acids)

SeqID: WP_011383521.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131943: biodegradative arginine decarboxylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011383521.1
MEFFRRLTFLVCAPAFDTDDLEGVRVQQIITEVERLGFEVVRARRIEDAEIAVQTDAAIG
CVLVDWEKGGKGAEATELINLMRRRGLEMPIVILVRGERFEDIPVDVLDYIDGYVFLAEE
TPEFIAKNLVSRLKQFAETLKTPFFGALVDYAEEGNQLWTCPGHNGGIFYNRSPIGRIFV
EHLGEAVFRDDLDNSVLELGDLLTHEGPALQAQKEAAKIFGAEKTYFVLNGTSASNKIVL
SALVAEDDLVLFDRNNHKAAHHGALLLGGGIPIFLETDRNAMGMIGPIYAEAFDEQAIRA
KIRDNPLVKDPEAWKKPRPFRVAVIEQCTYDGTIYSAEHILERIGHLCDYILFDEAWAGF
LKFHPLFRGCYGMGLKDRLDEDSPGIISTQSTHKQMAGFSQASQIHVRDRHIKGQSRRIE
HRRFNETFLLHASTSPFYPLFASLDVGAQMMRGRSGEVLWDDTIDLGIELRKKVRAIKRE
FVEKEKDSARHWFFEPFVPDRVPSPEGGETMVAWEDLPTETIAADPRYWEFTPGARWHGF
KHVSRSGYAMTDPNKLTLITPGFNRDTGAYAEYGIPAPVVAQYLRENRVVPEKNDLNSML
FLLTPGVESSKAGTLLSSLVAFKRRHDDNALLDDAIPEFVRRRPQRYRGLRIQDLCAEMH
AFFRDRNVSTLQRAQFSPEHRPHMVMRPNDAVRMLTRNQVDYLPIDQIDGRIATTLWVVY
PPGIATIIPGERLCERARPMLDYLKMFERSANLFPGFEAEIQGLYREIEPDGSIRFYTYV
AKE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory