PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011383657.1 (432 amino acids)

SeqID: WP_011383657.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011383657.1
MFMFAPEVERLDRPALKALQLQRLRDLLSHAYAHVPHTRAAFDAAGIKPDDLRHLEDLAR
FPFTVKADLRDNYPFGLFAVPREKVVRLHASSGTTGRPTVVGYTQADIDIWAGLMARSLA
ATGIRPGDVVHNAYGYGLFTGGLGFHYGAERLGCSVVPMSGGNTEKQIGLISDFGARALA
ATPSYALNIAEVAEQMGVSLAESPLAVGVFGAEPWSESMRAELDRRLGIKACDMYGLSEI
MGPGVAIECEHRVGLHGWEDHFLFEVVDPETLEPLPMGAEGELVITTLTKQALPMVRYRT
RDITRLTDEPCACGRTHLRILRVTGRNDDMMIIRGVNVYPSQIEAALVGFAGVAPHYQLT
LTRQGSLDHLTVEAEVEDSRGEDDRAHLARQVRHHLKSLVGISCEVIVRLPGELPRSQGK
AVRVRDLRKQAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory