PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011383893.1 (913 amino acids)

SeqID: WP_011383893.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597575: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011383893.1
MKRQTLSINGTSHSLEVPPMRRLSKVLREDLGLRGTKVGCDAGDCGACTVLIDGESVCSC
MIPVGRLTGREIITVEGLSEGAALGRLQRAFEHFGAAQCGICTPGMLNAATALLRSRPRP
SEDEVLDAIGGVLCRCTGYRKIVQAVVESHRFADEPVVPEAGSSVGTRLRRLDGRQRVDG
SEIYGDDVCPPDCLLVRVIRSPHPHARFTIGDLTALRVAYPGIVQVLTAADVPGINLFSV
IPGMEDQPAFAEGLVRYRGEAVAAVVMEADTNDIFQDADFPVLWEVLEPALSMEQATAAD
AVLLHAKRPGNILVRGFVQKGDLDLHWAKAAQVVEDSFTTGFVEHAYIEPEAGYARRVGD
TIEIYACTQAPYMDRDSVAAIMALPPEQVRIIPTAVGGGFGGKLDVSLQPYVALAAWSLG
RPVRCLYTRTESMASSTKRHPAAITARVGAGADGKLTAMEFDGDFNTGAYASWGPTVANR
VPVHCSGPYFIPALRARTRAIHTNNPPSGAFRGFGIPQASIAQESLFDQLADKLGLDRLE
FRRINAITAGQPTATGQILTASVGQQACFDALVPRWQEALAAAEAFNRTAGDRRRGVGVA
GMWYGCGNTSMSNPSTIRVALRADGAVVLFQGAVDIGQGSNTVITQICADALGIEIGKFT
LVMGDTALTADAGKTSASRQTFVSGRASQLAGLDLRDKILRMVNAGADSRLSLDGSILCV
SDGADTHQIDLQSLARDQDGLVMDGEGTFDPPTEKLDANGQGIPYATYGFGAQMAEVEVD
TALGTVKVLKIIAAHDVGRAINPMLLEGQIEGGIAQGLGLALMEEYIQGRTENLHDYLIP
TAGDIPPIETIIIEDAEPLGPFGAKGIGEQALIPTAPAILGAIRHATGVTIRQVPATPDR
VRAAIRAAKGVPS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory