PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011385160.1 (427 amino acids)

SeqID: WP_011385160.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Input

>WP_011385160.1
MLRDSDRIFTNLYGIHDWRLKGAMARGDWNGTKDILAKGRDWIIEEMKNSGLRGRGGAGF
PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIASFAIGAHA
AYIYIRGEFVREAEHLNIAIDEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI
ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT
KVFCISGHVNTPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLAIIPGGSSVPMLTKQQCE
EVTMDFDALRAMRSGLGTAAVMVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS
RMMGRMVTGDAELSEIDLLEEISRQIEGHTICALGDAAAWPIQGLIRAFRPEMERRILDR
QAKTNAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory