PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011385204.1 (340 amino acids)

SeqID: WP_011385204.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597667: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011385204.1
MDEKRRQFLTLGAGVAAGALLTRAAGAAGPIPNSAAGALRLVTYSAGGVAPRVGVVKASG
RVVDLGAAAKARGMALAFDPASMVSLIRAGDFALAQARQLMQEGPETGPLVSEVRLLAPI
PEPSRNVYAVGWNYLEHFKEGEAMRLKSADLPEHPVFFTKAVGTVNGPYDPIPYDAAVST
SIDWECELAVIIGKGGKNIAEADAMKHVFGFCVINDTTARDVQQKKHGGQWFKGKSLDGH
GPLGPWIVPASDIDHTRVHLITRVNGVVKQDASTEQMYFKVPRIIAELSAGLTLEPGDII
ATGTPPGVGGARKPPEFLKPGDVMETEIVEIGLLRNVIGG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory