PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011386063.1 (732 amino acids)

SeqID: WP_011386063.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011386063.1
MKRFGFGQSRTRVEDLRFLTGGGCYTDDINLTGQSYGMVVRSLLPHADVTVDAVAARAMP
GVLLVLTAAEMAEQGIGPMVCGFLPEDAVPRHPRPVIAGPRTRHAGEPLAFVVAETLAQA
RDAAEAVLVDYHPLPATPHDAFVWEMGDASRVAEAFARAARVVELDLINNRLAPTAMEPR
ACLARPLPGGRLELTAGSQGVHEIRDRLAPVLGIAADRLDVITPDVGGGFGLKISPFPEQ
AMALVAARILDRPVKWTGDRTESFLSDTHGRGHLSTARLALDAEGRFLGLQVETVADLGA
YISNYGAFVPTLAGTGMLTGVYDIPAFHARVRAIHTHTTPVDAYRGAGRPEAAYCIERLV
DAAAHDTGLSPVEIRKRNFIPPDAFPYASAGRHTYDSGEFARVMDRALERSGWADFASRQ
ADSTARGRKRGIGLAYYIEICGGTSGEDVTLTLSPDGGAEILVGTQSNGQGHETAYAQMV
AAELGLAIERVRVIQGDTRRIGTGGGTGGSRSLSQQGGAIASAVESFIEHLQPQAARLLQ
AERAEFDAGFYRAAGGSVSFAQVLAEAETPLAASLRFRPPAATFPNGCHVCEVEVDPETG
ETEIVRYTIVDDVGTVLNPLLLKGQIVGGAVQGIGQALLEHAVFDPESTQPLTSSLIDYA
VPRAAHIPEIDFSTVEIPCRTHPLGLKGAGEAGTIGAAPAVINALCNALELRHMDMPATP
LAVWNALNGKLE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory