PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011386745.1 (861 amino acids)

SeqID: WP_011386745.1 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011386745.1
MLEAYRQHVAERAALGIPPLPLSAEQTEALVGLLQNPPKGEEQALVDLITYRVPAGVDDA
AKIKAEFLDKVAKGTVACALISRETATQLLGTMLGGFNVKPLIELLSDAKVGAVAAEGLK
KTLLVFDFFHDVKELADKGNANAKAVLQSWADAEWFTSRPEVPKSLTVTIFKVTGETNTD
DLSPAPDAWSRPDIPLHALAMLKNPRPGIEADEPGNRGPLKQLDALAKKGNLVAYVGDVV
GTGSSRKSATNSVLWFTGEDIPYVPNKRFGGVCLGTKIAPIFYNTMEDAGALPIELDVNQ
MNMGDVVELRPYEGKALKDGKVIAEFTVKSEVIFDEVRAGGRIPLIIGRGLTAKAREALG
LPVSTLFRLPAVPKDTGKGFSLAQKMVGRACGLPEGKGMRPGTYCEPKMTTVGSQDTTGP
MTRDELKDLACLGFSADMVMQSFCHTAAYPKLVDVKTHRELPGFISTRGGVALRPGDGVI
HSWLNRLLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGK
MQPGVTLRDLVNAIPLYAIRAGLLTVEKKGKKNVFSGRILEIEGLPDLKVEQAFELSDAA
AERSAAACSVRLDKAPIIEYMTSNITLMKWMIANGYEDARTLGRRIKAMEAWIKKPDLLA
PDADAEYAAVIEIDLADVKEPIVACPNDPDDVKLLSEVAGAKIDEVFIGSCMTNIGHFRA
AGKVLEGKSDIPTRLWIAPPTKMDAMILNEEGYYSVLGKSGARMEMPGCSLCMGNQAQIR
KGSTAMSTSTRNFPNRLGIDTNVYLGSAELAAVCALMGKIPTVAEYLEQVNVVNAKAADV
YRYMNFDKIAEFSDVAAKVAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory