PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011779960.1 NCBI__GCF_000015305.1:WP_011779960.1 (954 amino acids)

SeqID: WP_011779960.1 NCBI__GCF_000015305.1:WP_011779960.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011779960.1 NCBI__GCF_000015305.1:WP_011779960.1
MSSKNSSLNSYGAKDTLKVGDNSYEIYRLDAVPGTEKLPYSLKVLAENLLRTEDGANITK
DHIEAIANWDPEAEPSIEIQFTPARVLMQDFTGVPCIVDLATMREAVAALGGDPAKVNPL
SPAEMVIDHSVILDVFGRADAFERNVELEYERNGERYQFLRWGQGAFDDFKVVPPGTGIV
HQVNIEYLARVVMVRDRAGEAGEGDSISVAYPDTCVGTDSHTTMENGLGVLGWGVGGIEA
EAAMLGQPVSMLIPRVVGFKLTGEIKPGVTATDVVLTVTDMLRKHGVVGKFVEFYGNGVA
EVPLANRATLGNMSPEFGSTAAMFPIDEETINYLRLTGRTDEQLALVEAYAKEQGMWHDP
AKEPVFSEYLELDLSTVVPSIAGPKRPQDRIELTDAKNAFRKDIHNYVEENHPTPETKLD
EAVEESFPASDSVSLSFADDGAVDARPSAANGATGRPSKPVTVKSAERGEFVLDHGAVVV
AGITSCTNTSNPSVMLGAALLAKKAVEKGLSTKPWVKTNMAPGSQVVTDYYNKAGLWPYL
EKLGYYLGGYGCTTCIGNTGPLPDEISAAINDNDLSVTAVLSGNRNFEGRISPDVKMNYL
ASPPLVIAYGLAGTMDFDFEADPLGQDGDGNDVFLKDIWPSAAEIQETITSSINREMFAD
SYADVFKGDERWRSLPTPEGNTFEWDEDSTYVRKAPYFDGMPAEPEPVKDIKGARVLALL
GDSVTTDHISPAGSIKKGTPAAQYLEEHGVEPKDFNSLGSRRGNHEVMIRGTFANIRLRN
QLLDDVSGGYTRDFTQDGGPQAFIYDAAQNYAKEGIPLVVLGGKEYGSGSSRDWAAKGTT
LLGVRAVITESFERIHRSNLIGMGVIPLQFPKGESAASLKLDGTETFDIEGIEALNEGKT
PKTVKVTAKKIAEDGTVSSAVEFDAVVRIDTPGEADYYRNGGILQYVLRNMLKS