PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011799605.1 NCBI__GCF_000015505.1:WP_011799605.1 (485 amino acids)

SeqID: WP_011799605.1 NCBI__GCF_000015505.1:WP_011799605.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011799605.1 NCBI__GCF_000015505.1:WP_011799605.1
MSKTTKSLLVQGYEVVIGFETHTQLTTQSKLFSRAPIAFGAEPNTQASAVDFALPGALPV
MNKGAVQRAIEFGLAVNAHIAEKSIFARKNYFYPDLPKGYQISQFEIPVVQGGVVEFFLD
GEKKSVRLVRAHLEEDAGKSLHEDFIGMSGIDLNRAGTPLLEIVTEPDMRSTAEAVAYAK
ELHKIVTWIGICDGNMQEGSFRCDANVSVRKPGEPLGTRREIKNLNSFKFMQQAMDYEVR
WQIEQIEDGHEIQQATVLFDPDTGETRSMRSKEDAADYRYFPDPDLPPLVIGRDWVEKTR
SEMSELPRVMAARFVADYGLPEYDAGQLTQSKATAAYFEAVATASKSPKLASNWVMGELS
RRLNAEEKSIEASAVSALQLAALIGRIADGTIANNAARQVFDALWTGEGLDVDALIEAKG
LKSMSDTGELETIIDGVLAANAKNVEEVKAGNAKAFNALVGQAMKATKGKANPAQVNELL
KKKLG