PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011814940.1 NCBI__GCF_000015585.1:WP_011814940.1 (1228 amino acids)

SeqID: WP_011814940.1 NCBI__GCF_000015585.1:WP_011814940.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011814940.1 NCBI__GCF_000015585.1:WP_011814940.1
MTDRSQQIRDQLAQRILILDCGMGTEIQKYPLEEADFRGERFSDHPSELKGNNDLLVLTR
PDIIRDITRQNLDAGVDIVETNTFNSQVLSQADYGTEHLVDELNIEAAKLARAVCDEVEQ
ETGIPRFVAGTMGPTGKTASISPDVNNPGHRDITFDQLFEAYAQQARGLLEGGADLILIE
TVFDTLNAKAAIYALEEVFEESGRRLPVMISGTITDASGRTLSGQTAAAFWNSVRHARPI
SIGLNCALGAEDLRPHLQELSKIADTHISTHPNAGLPNEFGEYDQSPEEMAKIVRTFAEE
GLINIIGGCCGTSPAHIAAIREQVKDFAPRQVPDLAPDVTRLSGLEPCNIGKDSLFVNIG
ERANVTGSARFRRLIKEGDYETALEVAKEQVENGAQIIDINMDEGMLDSKDAMIDFLNLV
GSEPDISRVPIMIDSSKWDIIEEGLKRIQGKGLVNSISLKEGEEAFLQQARKLKRYGAAA
VVMCFDEKGQADTYERRLEIAERAYNALVNDGFEPADIVFDLNIFAVATGIEEHNNYAVD
FIEATRWVKENLPHAKVSGGLSNLSFSFRGNEPVREAMHSVFLYHAIKAGLDMAIVNAGQ
IEVYDEIDKELRELCEDVILNRHEDATDRLLELAERYKGQGGKKKEEDLAWREEPVEKRL
EHALIKGITDYIDVDVEEARQKHDRPIQVIEGPLMDGMNTVGDLFGEGKMFLPQVVKSAR
VMKQAVSHLLPYIEAEKSGDDEPAGRVLIATVKGDVHDIGKNIVAVVLQCNNFEVHDIGV
MVPTETILQKAKEVKADIIGLSGLITPSLDEMIGVAQEMERQGFTCPLLIGGATTSRVHT
AVKIAPNYSAPSIYVKDASRAVGVASKLVSETQAEPYKQELAAEYQQVREQHEARQKKTK
WVTFEQAKQNATPIDWSAHQPIQPQKPGVQVLDDYPLEDLVERIDWTPFFAAWQMRGQYP
KILDDEKQGEEARKLFDDAQAMLRRIIDEKWLSARAVFGLFPANSTGEDTEVYADEQRSE
VLATLCHLRQQTEKGEGKPHQSLADFIAPKDSGVLDWMGAFAVTAGVGIDEHVRRFEEAG
DDYSAIMLKALADRLAEAFAESLHEQVRKDHWGYAADENLSNEDMIKERYQGIRPAPGYP
ACPDHTEKDRLWEILNVEENIGLTLTESRAMVPTAAVSGWYFAHPEARYFGVGKIFQDQV
EDYAKRKGMSRKEAERWLGPNLGYEPED