PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011914383.1 NCBI__GCF_000013785.1:WP_011914383.1 (1073 amino acids)

SeqID: WP_011914383.1 NCBI__GCF_000013785.1:WP_011914383.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            7.80
    CytoplasmicMembrane    0.85
    Extracellular          0.69
    OuterMembrane          0.66
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            7.80

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011914383.1 NCBI__GCF_000013785.1:WP_011914383.1
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALKEEGFRVILVNSNPATIMTDPAM
ADATYIEPIKWATVAKIIEKERPDALLPTMGGQTALNCALDLEKHGVLEKFGVEMIGANA
DTIDKAEDRSRFDKAMKNIGLACPESGIAHNMEEAYAVLDKVGFPCIIRPSFTMGGTGGG
IAYNREEFEEICARGLDLSPTSELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPM
GVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELSNDITGGRTPASFEPAIDYVVTKVP
RFAFEKFPKADARLTTQMKSVGEVMAIGRTFQESMQKALRGLEVGATGFDPKLNLADAEA
ESTLKRELTVPGADRIWFVADAFRAGKSVEDVFALTNIDPWFLVQIEDLVKDEEQVKTLG
LSSIDRDLMYKLKRKGFSDARLAKLLGVTEKNLRSHRHKLKVLPVYKRVDTCAAEFATDT
AYMYSTYEEECEANPSGREKIMILGGGPNRIGQGIEFDYCCVHAALAMREDGYETIMVNC
NPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQYGGQTPLKICRALEEAGVPI
IGTSPDAIDRAEDRERFQQMVQRLNLRQPQNATARSEEEAIAASKAIGYPLVVRPSYVLG
GRAMEIVYEEEELKRYMREAVQVSNDSPVLLDHFLNCAIEVDVDAVCDGETVVIGGIMQH
IEQAGVHSGDSACSLPAYSLPQHIQDEIREQVRKMALELDVVGLMNVQMAVQGEDIYVLE
VNPRASRTVPFVSKCIGESLAKVAARVMAGKSLAEVGFTREIIPTYFSVKEAVFPFAKFP
GVDTILGPEMKSTGEVMGVGDSFAEAFAKAQLGASEILPTSGCAFLSVREDDKPYVEQVA
RDLVGLGFEVVATAGTARIIEAAGLPVRRVNKVTEGRPHVVDMIKNDEVTLIINTTEGRQ
SIADSYSIRRNALQHKICITTTIAGGQAICEALKFGPEKTVRRLQDLHAGIKA