PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012470155.1 NCBI__GCF_000020385.1:WP_012470155.1 (1082 amino acids)

SeqID: WP_012470155.1 NCBI__GCF_000020385.1:WP_012470155.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012470155.1 NCBI__GCF_000020385.1:WP_012470155.1
MTLNILHVTAIAAAYTGLLFLVAWYARRRFEQGRSLVNNPYVYSLSIAVYCTSWTFYGSV
GKAATSGIDFLMIYLGPSLVAFSWFFILRRIIRISKENNVSSIADFISLRYGSSQLLGSL
ITLIAVLGIMPYIALQIKAVVTSFALVSGVTERTITLPGADSSVILPTGLTLAVILSIFG
VIFGARRLPSTERHEGLIAAVAFESVVKLVSLVGVGVFVTWYLFDGFEDILFRFHTQYPL
LFERLFTLNTTQGNDVIPSSTMLFLSMGAIILLPRQFHVLVIENADLRHISKAMWLFPTY
LFLINLFIMPIALGGILQSGSNIGADYFVISVPLAAGNESMALLAFLGGLSAAAGMVMVE
SVAISTMLLNNLFMPVIVRITPKQWFPLLLINLKRVAIFLVVFLGYFYYQAVGDSFMLVN
MGLISFLAAMQFLPALLGGLYWPKGNKIGAISGMALGFIIWSYTLLIPSFFAAVPDSPIM
RDGLFGQALLKPTALFGLTGMDMWSHALFWSMLFNVGAYLVCSLLISQSDLEKEQVRRFI
GKFETERRQVKSAAKRLSKPVTIPQFIGLMGKFIGPEEASQAMTSYLKGRMIDEEIMVPE
FELPAMKRFVERTLAASVGAAAAGAIMDSYLSDMGSRMESVYDIFSTVRASLDQSREALY
VRLKASEIINRTLDLQTIMDELLQLLLKEFRLDVALIQIRTSSDVPLSVQSYQGCDRRPI
NPEHWYLESDPYIKMAMIDQTTHFVNDIKNLQAIIDLSKTTSEGFVSFAHIPIYREGEES
LGVLSVYSKSIIGLFTEEFVGLLTSLTGQLAQAARLASEMQAKERERREKEQALLANARV
KRDMEIAEQIQLSLLPASPPVLFGIELAGRCYPAAHVGGDYYDFFKRDDHTIDLLIADVS
GHSVGAALIMAEVRTLLRAHSSRAVSPSSILGVLNSQLYEDLTRAELFITMFYARYSAAT
GRLSYANAGHNKPLIHRQGEQSCIELDAEGLILGIKPSMIFEERSINLQQGDTLLFYTDG
IPEATNRTGELLGTGQVCQHLTLQSTLPVDTIADSFFELVKEYSQSTTLQDDVSMVVMKI
VA