PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012590286.1 NCBI__GCF_000021745.1:WP_012590286.1 (2684 amino acids)

SeqID: WP_012590286.1 NCBI__GCF_000021745.1:WP_012590286.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597595: pyoverdine synthetase D [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012590286.1 NCBI__GCF_000021745.1:WP_012590286.1
MKENVAVETPPGVAIIGMAGRFPGADDVAAFWRNLRENVESISHFTDAELEDAFDPSVRG
DPNFVRARSILEGVENFDAGFFAMHAREAELTDPQHRVFLECAWQALEDAGYDPATYKDA
IGVFAGCSMSTYFLRNVLKDRAAVELFTSNYQVGSYGELIGALPDVFATRLSYKLGLRGP
AMTIQTACSTSLVAIAEACKSLLLYESDMALAGGVSITFPQKRGYLALEGAMVSPTGHVR
SFDAKADGTVFGSGAGVVLLKRVEDAIADGDTIYAVIRGTALNNDGAARAGFTAPSVNGQ
WEVIAAALANAEVEARSISYVECHGTATPLGDPIEVAGLTRAFRASTDDTGFCALGSVKP
NVGHLDAAAGVAGVIKTALALKTKQLPATLHFETPNPHIAFEGGPFYVNKTWRDWPQEAE
PRRAGVSAFGVGGTNAHIVLEEAPLAVSEASGRPTQIICVSARSAAALEKSRENLAAYLA
EKPQAPLADVAFTMAVGRRAFAHRAAIVADDAAAASAALISGRDLVFGVPKAEPRKIAFM
FPGQGAQYPAMGHGLFETEPAFADSMRRSAEILRPILNADLCALLYGDEPGRLSAQALQA
TEFAQPALFSVGLALAELWRQRGVAPQMMIGHSVGEFVGACLAGVFSHEDALRLIAARGR
LMQEMPSGSMMAVRLPEAELLPYLKGDVALAAVNGPKLCVAAGPDEAIAALDAQLSAQGV
MTRRLHTSHAFHSPMMEPAANALRKVVEGVKLSPPTAPLISSTTGGWLTAEEAVSPHYWA
AHCREPVRFAAGLKTLLDAAGVDPILIEAGPGLALSALARQCGAGNAPDAVVASLPEASR
EASDMEVFARATAQLWCAGVAIDWRAVYSNERRLRVPLPTYPFERARHWLEAPPVAHAAA
AVSNIAPREPEVLASLAAGASPAFPTHEIFPPMAAAPMTTSQFDSAPAAAGTIEKLQKHL
VDLLESLSGESVADAAPDATFLEMGFDSLFLSQVTQQLQRDFKVKLTFRQLLGDLATIPA
LAAHIEEVLPPEIRAAYQPSAPAPAVAAAQAPAAAPLAAAAFATPAASSLPLLGAGASGV
EQIIRDQLETMSRLMANQLAALGGAPAAAASPAAAVAAPAPAARAPTPAPSLAAAASAAA
APSGDEPKSRFELLAAARSAPAADMNEIQQRALAELTERFNARSPSSKRMTAEYRPVLAD
PRAAAGFRPEWKDLVYPVVSDRAAGSRIYDVDGNDYIDLVNGYGQTFFGHAAPFVVDAVA
AQLKQGFAIGPQSHLAGKVAALFSEMTGNERVTFCNTGSEAVMAAMRIARTVTGRSTIVT
FTGDYHGQFDEVLVKGALRSGVARAMPAAAGIPNKSVENMVVLPYGAPDSLDWIRTHADD
LAAVLVEPVQSRHPDLRPLEFLKEIRAITEKSGAALIFDEVVTGFRMHPGGMQHLFGIRA
DLATYGKVVGGGLPVGILAGKAAFMDALDGGQWRYGDDSYPETGMTFFAGTFVRHPLVMA
AVWAVLNHLKEKGPALQEAVSARTAGLVQRLSDFLRQRGVDLQIESFGSLFFFNFGNISR
YAGLFYPLMLERGVYIQEHYPCFLTTAHSEADVEAIARAFEDSVTAMQKADFLPAPAGLG
PEPETDGPLTEAQTEIWLSAQLSDEASCAFNESVTLRLRGDLNRDALEAALNKVIARHDA
LRAVFTADGARMQIQPELTLTLEPRDLSDLPRAEAEASWRAALAQDARTPFDLVAGPVIR
ASLARFAADDHALALTAHHIVCDGWSFNVIIDEVTKLYEEIVADVAADLPPPMSFLRYGA
EERARQKREGAAVDAFWLPQFTPPPPPLELPTDRPRRLQKSFAGATLTRRIDADLTQRFR
KATAKQGCTLFVALLASFEVMLARLAGQNEVVVGIPAAGQSLAEADSLVGHCVNFLPLRA
RWSDGATMAEHLAATRQGVLAAYEHQSFTLGTLVRKMDRPREAGRRPLVEVQFNLEKLGD
KIHLKGLEVEAQSNPKAAVIFDFFFNVTEQDGGLRIDCDYNTDLYDEATVERWIGHYRSL
LGAVADDAARPIAALPLLSAEQRNWLTKGLNDTAADDLDLRPVHELFAAQAAKTPDAVAA
RFGESALTYRQLDERANRLANHLAAVVKDSSARIGVAAERSLDMLVVLLAVMKTGCAYVP
LDPSHPAARLRLVLDNAAVSAIVSDNAFMGAMASGTPVVRLDADAAAIAARPATAPAFPS
DGARPAYVIFTSGSTGVPKGVEIAHRSVANLLWSIARKLEAGPRDTLVAATTISFDIAAL
ELYMPLITGGTVVIASRDDVRGGFGLAALIEKPETTIVQATPSLWRMLTEAGFKPRPGLR
MLCGGEALPRDLADLLLANDGELWNVYGPTETTIWSSIGRVKPAPAPITIGEPVANTGLY
VLDKAHQLAAPGVVGELFIGGLGLAIGYFRRPDLDTAAFFNIAVDDSGPQRLYRTGDLAR
RLADGSIEVLGRVDAQVKLRGFRIELEEIEAAMRQCPGVSAFAAAVQTPPQGTPRLVGYY
VAAQPILAQELSSYAAQRLPDYMAPALWMRLDALPFTPNAKLDRKALPQPEVGSGEHKRI
VTAPRTPLEAKLAAIWGEVLQLDEIGVNDNIFALGADSIHLFRIAARMMAENLGLEARHL
MRFPTIAELAGAAGDKSVSAAKAPSAAPSLKSFRRGAQIKETSA