PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012592503.1 NCBI__GCF_000021745.1:WP_012592503.1 (1245 amino acids)

SeqID: WP_012592503.1 NCBI__GCF_000021745.1:WP_012592503.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012592503.1 NCBI__GCF_000021745.1:WP_012592503.1
MTHRFDGAETRAAFLDAARKRILVLDGAMGTMIQQHKFTEEQFRGERFADWPSDLRGNND
LLSLTQPKAIEQIHRAYIDAGADIIATNTFNSTSISQADYGMQELVFELNRESARLCRVA
ADAAEKHDGKRRFVAGALGPTSRTASISPDVNNPGFRAVSFDELRDAYDEAARALIEGGA
DLLIIETIFDTLNAKAALAGVRDAFAKLGVEAPVMISGTITDLSGRTLSGQTPTAFWHSL
RHADPLTIGLNCALGAREMRAHLAELSRIADTLVCAYPNAGLPNEFGLYDESPEYMASLV
GEFADSGLVNVVGGCCGTTPAHIHAIAKRIEGVAPREIPEIAPLLRLSGLEPFVLAPEIP
FVNVGERTNVTGSAKFRKLIKQGDFAAALDVARDQVAAGAQIIDVNMDEGLLDSEKAMVE
FLNLIAAEPDIARVPVMIDSSKFSVIEAGLKCVQGKSVVNSISMKEGVEKFIADARTVRA
YGAAVVVMAFDEKGQADTFERKVEICAKAYQILTQEAGFPPEDIIFDPNIFAIATGIEEH
NNYGVDFIEATREIRKRFPLVHISGGVSNLSFSFRGNEPVREAMHAVFLYHAIQAGMDMG
IVNAGQLAVYAEIEPGLREACEDVVLNRRPDATERLLAIAEGFRGHGVEKAERDLVWREQ
PVIKRLEHALVNGITEFVELDVEEARAASKRPLDVIEGPLMAGMNVVGDLFGAGKMFLPQ
VVKSARVMKQAVAYLLPYMDEEKRKNGGSERSTAGKILMATVKGDVHDIGKNIVGVVLAC
NNYEIIDLGVMVPAAKILSVARAEKVDAIGLSGLITPSLDEMCYVAAEMEREGFDLPLLI
GGATTSRVHTAVKIHPNYTRGQTVYVNDASRAVGVVQSLLGESARDAAETFRAEYEKVAA
AHRRGEAEKLRLPIGKARANALKIDWDDYAPPRPTFTGSRVFRSYDVAELIPYIDWTPFF
QTWELRGRYPAILDDPKQGEAARSLFDDAQAMLKRMVEEHWLDPKAVIGFWPANSVGDDI
ALYTGESRSEKLAAFHTLRQQLTRRDGKPNIALSDFIAPAGGKPDYIGAFVVTAGAQEGK
IADRFAKANDDYGSILVKALADRIAEALAERMHERVRREFWAYAPDEAISEDDRLREEYR
GIRPAPGYPAQPDHTEKATLFELLAAEKRIGVSLTESFAMWPGASVSGLYFAHPQAHYFG
VAKIERDQVEDYALRKGMSVAEMERWLAPILNYDPASVAEAAAAE