PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_026608213.1 NCBI__GCF_000427445.1:WP_026608213.1 (586 amino acids)

SeqID: WP_026608213.1 NCBI__GCF_000427445.1:WP_026608213.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_026608213.1 NCBI__GCF_000427445.1:WP_026608213.1
MSNLLTGAEMVVRALQDQGVETIFGYPGGAVLPIYDALFHQKHIKHVLVRHEQGAAHAAE
GYARSSGKAGVLLVTSGPGATNAITGLTDALMDSIPLVCITGQVPTHLIGSDAFQECDTV
GITRHCTKHNYLVRHVDDLARVLHEAFYVAQNGRPGPVVIDIPKDVQFAVGAYFGPHKVE
HKTYKPRLEGDPDKIAQAVEMMAAAKRPIFYTGGGVINSGVEASHLLRELVGLTGFPITS
TLMGLGSYPASGEKWLGMLGMHGTFEANNAMHDCDLMVAVGARFDDRITGRLDAFSPGSK
KIHVDIDPSSINKNVKIDLGIIGDCAHVLRKMVELWRARRHVASAEPLAKWWAQIDQWRA
RKSLSYKASKEVIKPQFAVQRLYELTKARDVYITTEVGQHQMWAAQHYHFEEPNRWMTSG
GLGTMGYGLPAAIGAQLAHPDALVVDIAGEASILMNIQELSTAAQYRLPVKVFILNNEYM
GMVRQWQELLHDGRYSESYSEALPDFVKLAEAYGAHGIRCSDPAQLDAAILEMIDTPRTV
IFDCIVDKTENCLPMIPSGKAHNEMILPDHDAEIGSVIDAPGKMLV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory