PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_027178998.1 NCBI__GCF_000429985.1:WP_027178998.1 (804 amino acids)

SeqID: WP_027178998.1 NCBI__GCF_000429985.1:WP_027178998.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_027178998.1 NCBI__GCF_000429985.1:WP_027178998.1
MADFRKALTDGRVYFFDGGYGTFLQKRGLPAGMSPELFGLEKPEVVRSVHEDYANAGANV
LTTNTFGGSAPKLGSKVKARDLNREMALLARSVAGDNLFVAGSVGPTGHFIEPLGDFTFK
EMVEIYKEQIQGLVDGGVDLILGETHFDLAEARALVVAAREVCALPVALSMTFESPNACL
TGSSPQTFVDAMQNMEIDIVGTNCSAGPEQIFEVISNMRPRLSTPLLVEANAGLPELDEN
RNTVFRLEPQPFAEQSARFLAIGAKFIGGCCGTGPDHIRALKSVIGDAAWQKPVPEDDAQ
MVITSRAESVCIGFNHTGVIIGERINPTGKKVLSAELQEGRFTEALKFAGQQIEAGAPIL
DVNVGAPMVDETMILPALCKEIIAQHQVPLSIDSTNPDAVEAALWNYPGTPLVNSISGEP
GRMERLGPLCKKFGAPFILLPIIGSKLPFECKDKIEVTEKLLREAEALGIPRRLIMVDAL
ALTVSSRPMAARHCMDFIRHCKEEWNLPTVLGLSNVSFGLPARELLNSTFLTLCQGQGLC
AFISNPNSARLRESLYSAEVLLARDKQAENFIDMYSEWSPAAPSSTGGTKGGEGKKSGAE
TMFEAVVKGERGLIEDMVRKALDEDRDPFDIVNGELIPAIMEVGEKYERKEYFLPQLLQS
AETLQKGFEILKPLLEKSGKQKEKDVIVMATVEGDIHDIGKNIVCLMLRNHGFEVVDLGK
DVPAETIVKTAIEKNARIIGLSALMTTTMVRMEDTVNLLQEKGLDIKVMIGGAVITEGFC
KAIGADGWSTDAVAAVKLAKTLVQ