PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_027179593.1 NCBI__GCF_000429985.1:WP_027179593.1 (723 amino acids)

SeqID: WP_027179593.1 NCBI__GCF_000429985.1:WP_027179593.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_027179593.1 NCBI__GCF_000429985.1:WP_027179593.1
MKIRWKLLLILLAFSLIPLLVMRIHSVNSLTSLGKDLQNQTRITLLDRTMEDFTHLSNSI
AEIINIEGRLYRTSLKSIQIRAEQLLNDNETLGTKLNPFIITPEKELNTPKLAPDPNYKK
LNLRRRQMMSGKSDRPVFSDLPISKTNISFWIPEGLDVSQVMPLIKKLEPLLLLFQSCNG
TLEDLFLWLEINLDNGLTVSYPAHNSFPHKYDPRISHWYKELKKTRQTSWSLPTTDPATR
SLVHRLTTPLLDKEGHFIGSASIVVPVDSPVDHKSITRFTGEMSTFLVSTNFAAPQKDRL
LILGKYGSNRKIDSGSQPMGHFWQTPEREEWLYEESPEFKTLVTDIKNMNPGVLQMPFAG
KQSLWTYNPVNNGLAILLVTPTATLTREADAAEQYVKSSISSHIYTVTIIFGVTILTLLA
SAYLLSMGLSTPIRKISAAVNRIAKGDWSTRVDINSTDELGELADTFNHMVPQLKERAAI
LQALSLADEAQKNFLPDKMPELERADIAASCVFSEKTGGDYYDLVDSSICGKDKFAMSIG
DVSGHGIAAALLMTTAGAYLRALTGSYNLVEIVKKTNRLLSRDCAKSSNFITMMTAVCNL
DKMTLKWIRAGHDPGMLYTPETDEFRELIGEGLALGIDPDYDYEENVTRIEPGQVLVLYT
DGICEAHSPAGLQFGKTGIKQTIRDNWEKPAEMIVKKMQAEVKKHCAELPTEDDYTVIVV
KFL