PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_036374656.1 NCBI__GCF_000015305.1:WP_036374656.1 (1253 amino acids)

SeqID: WP_036374656.1 NCBI__GCF_000015305.1:WP_036374656.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_036374656.1 NCBI__GCF_000015305.1:WP_036374656.1
MRVNSADPNIWEPNIRPDCTDELKVALGRRIVVIDGAMGTAIQRDRPDEAGYRGERFKDW
PSDLVGNNDLLTLTQPQIIEGIHREYLEAGADILETNTFNANAVSLSDYGMEKLSYELNY
AGAALARKACDEFSTPDKPRYVAGALGPTTRTASISPDVNDPGARNVSYDQLVAAYLDAA
SGLVDGGADLLIVETIFDTLNAKAAVFAIETLFEDRGRRWPVIISGTITDASGRTLSGQV
TEAFWNSVRHARPLAVGLNCALGAPEMRPYLAEMSRIADTFVSCYPNAGLPNAFGEYDES
PTRQAGYVAEFAEAGLVNLVGGCCGTTPAHIAEIARVVDGKPPRKVPEIPVATRLAGLEP
LNITDDSLFVNIGERTNITGSARFRNLIKAEDYDTALSVALQQVEVGAQVIDINMDEGMI
DGVAAMDRFTKLIAAEPDISRVPVMIDSSKWEVIEAGLKNVQGKPIVNSISMKEGEEKFI
REARLCRKYGAAVVVMAFDEQGQADNLERRKQICGRAYRILTEEVGFPAEDIIFDPNCFA
LATGIEEHASYGIDFIEACAWIKENLPGVHISGGISNVSFSFRGNNPVREAIHAVFLFHA
IKAGLDMGIVNAGALVPYDSIDPELRDRIEDVVLNRREDAAERLLEIAERFNSKGETEDA
GVAEWRSLPVRERITHALVKGIDAHVDDDTEELRAEIADAGGRPIEVIEGPLMDGMNVVG
DLFGAGKMFLPQVVKSARVMKKAVAYLLPFIEAEKAENGTSDSKDTNGTIVMATVKGDVH
DIGKNIVGVVLQCNNFEVIDLGVMVPAQKILDAAKEHNADIIGLSGLITPSLDEMANFAV
EMEREGLEIPLLIGGATTSRAHTAVKIAPRRGGPVVWVKDASRSVPVAAALLDDRQRPAL
LEATEADYASLRERHAQKNERPMLTLEKARANRTPVEWDGYTPPVPAQGLGVREFKDYDL
AELREYIDWQPFFNAWEMKGRFPDILNNPATGEAARKLYDDAQEMLDTLIKEKWLTANGV
IGFFPANASPGGDDIVVYTDDTRTEVLTTLHNLRQQGEHRSGIPNRSLGDFIAPKESGLR
DYIGAFAVTAGLGSQDKIMEFKAALDDYSAILLESLADRLAEAFAERMHERVRKEFWGYQ
PDEQLDNDALIGEKYVGIRPAPGYPACPEHTEKATLWKLMDVKERTGIELTESMAMWPGA
AVSGWYFSHPQSQYFVVGRLAQDQVADYAKRKGWTLAEAERWLAPNLGYNPED