PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_042118777.1 NCBI__GCF_000092045.1:WP_042118777.1 (1257 amino acids)

SeqID: WP_042118777.1 NCBI__GCF_000092045.1:WP_042118777.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_042118777.1 NCBI__GCF_000092045.1:WP_042118777.1
MFDNLFGPETGKRDGNEVFAALRKAASERILVLDGAMGTQIQGLGYDEDQFRGTRFIGCA
CHQKGNNDLLILTQPDAIEEIHYRYAKAGADILETNTFSSTRIAQADYQMEGAVYDLNKE
GAEIVRRAALRAEREDGRRRFVAGAIGPTNRTASISPDVNNPGFRAVTFDDLRSAYGEQI
DGLIDGGADIILIETIFDTLNAKAAIFACEERFEAKGVRLPVMISGTITDLSGRTLSGQT
PSAFWNSVRHANPFTIGLNCALGANAMRPHLQELSGVADTFICAYPNAGLPNEFGQYDET
PELMAAQIDSFAREGLVNIVGGCCGSTPEHIRAIAETVAKYKPRPIPEHRPFMSLSGLEP
FELTKDIPFVNVGERTNVTGSAKFRKLITNADYTAALDVARDQVENGAQVIDINMDEGLI
DSEKAMVEFLNLIAAEPDIARVPVMIDSSKFSIIESGLKRVQGKPIVNSISLKEGEENFL
AQARLLRNYGAAVVVMAFDETGQADNYDRKVEICTRAYKLLTEKIGFPPEDIIFDPNIFA
VATGIEEHNNYGVDFIEAARTIRERMPLVHISGGVSNLSFSFRGNEPVREAMHAVFLYHA
IQAGMDMGIVNAGQLAVYDNIDPELREACEDVVLNRRADGTERLLEVAERFRGAGAKEGR
VQDLSWREWSVEKRLEHALVNGITEYIEADTEEARRQAARPLHVIEGPLMAGMNVVGDLF
GSGKMFLPQVVKSARVMKQAVAVLLPYMEEEKRLNGGDDRQSAGKILMATVKGDVHDIGK
NIVGVVLACNNYEIVDLGVMVPATKILETAIAEKVDVIGLSGLITPSLDEMVHVASEMER
QGFEIPLLIGGATTSRVHTAVKIHPGYNKGQAVYVTDASRAVGVVSALLSPETRQGYVDD
IRAEYAKVAAAHARSEAEKVRLPLARARENAHKIDWSAYKPTKPEFFGTRVFEDYDLAEL
AKYIDWTPFFQTWELRGRFPAILEDEKQGEAARALWADAQAMLKKIIDEKWFRPRAVIGF
WPAGAVGDDIRLFTDESRSQELATFYTLRQQLSKRDGRANVALSDFVAPVTSGVQDYVGG
FVVTAGIEEIAIAERFERSNDDYSSILVKALADRFAEAFAERMHEQVRREYWGYASDEHL
SNEDLIGEAYAGIRPAPGYPAQPDHTEKKTLFKLLDAEKAAGVKLTESYAMWPGSSVSGL
YIGHPDSYYFGVAKVERDQVEDYAKRKGMDVSEVERWLGPVLNYVPRKADEEIDDAA