PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_044410961.1 NCBI__GCF_000934765.1:WP_044410961.1 (781 amino acids)

SeqID: WP_044410961.1 NCBI__GCF_000934765.1:WP_044410961.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_044410961.1 NCBI__GCF_000934765.1:WP_044410961.1
MTIHNLGYPRIGDKRELKFTLEAYWKGEKTLADLEKQARGLRYQNVQTQIAAGIELIPLN
DFAYYDQVLNMSTLLGVIPKRFRQENFDVEVAFRMARGRAPSDDQACCAGHGHEQNKSKA
GYAGAMKKWFDTNYHYIVPELYDDTEFKITDTRLFDEVAEALALKSDGTNIDFKPVLVGP
VTYLYLAENVSNAIPKLSRLPSLLAVYQQVLQKLADLGINWVQIDEPILGLELSTEWQNA
FNQAYTELAQTPVKLLLATYFETLGDNLVLACNLPVAGLHYDGLRGEKQLKDLIEQYPAE
KVLSLGLVDGRNIWKTDLNAAIASLKVAKNKFGDQLWIAPSCSLLHVPVNLEVEEKLNPE
LKTYLAFAKQKLAEVKLLADALNGQADQQALQANAQAIAAKQSSKLIHNAQVQARLAQLD
QIALDRPVPYSERAKLQKGKFNLPLFPTTTIGSFPQTQEIRQARRQFKNGELTETQYVEA
MQAEIRDVCERQERMGIDVLVHGEPERNDMVEYFGEQLDGYAFTQFGWVQSYGSRCVKPP
IIFGDVSRPKPMTVSWSQYAQSQTDKIMKGMLTGAVTMLQWSFVRNDQPRETTCNQIALA
LRDEVLDLEQAGIHMIQIDEAALREGLPIKKSDWADYLRWAVNSFRMTTSGVQNDTQIHT
HMCYSEFNDIIDAVAAMDADVITIETSKSNMKLLDAFVDFEYPNEIGPGVYDIHSPNIPT
VEQMVRLIEKAAQLIPAERLWVNPDCGLKTRGWAETEPALSNMVKAAMVLREQFADQAKS
A