PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_052665615.1 NCBI__GCF_000969705.1:WP_052665615.1 (325 amino acids)

SeqID: WP_052665615.1 NCBI__GCF_000969705.1:WP_052665615.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598533: ADP-L-glycero-D-mannoheptose 6-epimerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_052665615.1 NCBI__GCF_000969705.1:WP_052665615.1
MRVLVTGGAGFIGATTTAALLGAGHEVTVLDDLSTGHRDAVPAGAELVVADATDPTAVGP
VVGDGRFDACIHFAALIEAGESMRHPERFFTVNTAGTARLLEVLIDHAVPRFVLSSTAAV
YGEPERTPIDEDHPLAPTNAYGESKLLIERMLAWHHRIHGLRTAALRYFNAAGATPGRGE
RHDPETHLIPLVLQVAAGERDQVSIFGSDYPTPDGTAIRDYVHVADLADAHVRAVERLDQ
LGTCTVNLGSGTGFSVREVIDAARRVTGHAIPVIEADRRAGDPARLVASATRARELLGWE
PAITDLDRIVADAWNATVDHAGAHP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory