PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057507134.1 NCBI__GCF_001431535.1:WP_057507134.1 (516 amino acids)

SeqID: WP_057507134.1 NCBI__GCF_001431535.1:WP_057507134.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057507134.1 NCBI__GCF_001431535.1:WP_057507134.1
MPIEPLPSCRFGAGPLTIEDVVALADRRAQAVLDDAPGFRARIQRGADFLDRLLREDGVV
YGVTTGYGDSCTTVIPPSLVAELPHHLYTYHGCGLGRFLDAQETRAVLAARLASLSQGMS
GTSVALLEGLAALLQHDVLPRIPAEGSVGASGDLTPLSYVAAVLCGEREVLFEGSVQSAA
EVLPRIGLQPLRLRPKEGLALMNGTAVMTGLACLAWHRADYLCRLATRLTAFNVLASDGN
AHHFDETLFAAKPHPGQARIAARLRADLHSDRPPRNEQRLQDRYSLRCAPHVIGVLEDTL
PFLRQLIETELNSANDNPLIDPDEERVLHGGHFYGGHIALAMDTLKNTVANLADLLDRQL
ALLVDARYSHGLPANLSAATGPRAAINHGLKALQISVSAWTAEALKNTLPASVFSRSTEC
HNQDKVSMGTIAARDCLRVIELAEQVVAGMLIAARQAVALRQRVGLQAQLQGELAAMHDD
LGQRIALIEEDRALDGELRQLLQDIRSRQWELYRDA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory