PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057507300.1 NCBI__GCF_001431535.1:WP_057507300.1 (687 amino acids)

SeqID: WP_057507300.1 NCBI__GCF_001431535.1:WP_057507300.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598210: fatty-acid oxidation complex alpha-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057507300.1 NCBI__GCF_001431535.1:WP_057507300.1
MLSGFDGLRLAHWHPEIRDDGVVVLNLDRQDANVNAMSQDVLLELGDLIERIAIDPPKGV
VIQSAKKAGFIAGADLKEFQEFDRRGTVNDAIRRGQVTYQKLAELPCPTVAAIHGHCLGG
GTELALACRYRVASNDSSTRIGLPETQLGIFPGWGGSARLPQLVGAPAAMDMMLTGRTLS
ASAARNIGLVDKVVAPALLLDTAVALALKGTVRPFKQRATAWATNTWPARKLLAPQMAKQ
VARKARKEHYPAPYALINTWERSGGKPVQARLDAERRAVVKLASTPTARNLIRIFFLTER
LKALGSGDHGIHHVHVVGAGVMGGDIAAWSAYKGFNVTLQDREQRFIDPAMQRAQTLFEK
KVRDESKRPAVAARLQADLAGAGAAQADLVIEAIIENPQAKRDLYQTLEPKMKADALLTT
NTSSIPLIELRDHIQRPAQFAGLHYFNPVAQMPLVEIIHHDGMAPETERRLAAFCKALGK
FPVPVAGTPGFLVNRVLFPYMLEAATAYAEGIPGPVIDKAAVKFGMPMGPIELLDTVGLD
VAAGVGEELAPFLGLQIPAALQTVEPGKRGKKDGQGIYAWENGRAKKPEVPKGYQAPGDL
EDRLILPLLNEAVACLHEGVVADADLLDAGVIFGTGFAPFRGGPVQYIRATGADALVERL
KVLQQRHGDRFSPRPGWDNPILREAVV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory