PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057507603.1 NCBI__GCF_001431535.1:WP_057507603.1 (1270 amino acids)

SeqID: WP_057507603.1 NCBI__GCF_001431535.1:WP_057507603.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.27
    Cytoplasmic            0.67
    Periplasmic            0.06
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.27

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057507603.1 NCBI__GCF_001431535.1:WP_057507603.1
MKWIGGFEGADHVNGSGRALSMAVDSGHLARLDTDYRRLRRMGFSAVRESLGWRTCEQGD
GFNFQSLHARMQAAERAGLEIRWTLMHYGVPADLDLLDGNKTAFVERFAAFCQATATALA
DYASPSPRLINPINEISFLSWAATHTGLIHPHAGDRPAEAGRLKSLLIRAALAGCSAFRR
VDPTARMLWVEPLIHVVAPLASPALRQQAERLHAGQFEVLDALMGRVQPSLGGAPGYVDL
IGVNYYHGNQWEAGSQRPLDWHRADPQRVPFSRLLVKLQQRYGVPLTLSETSHVGCGRGA
WLSDIAQQVRYAADAGARLEGICLYPVVDRPDWESPLHWHQSGLWDVQPNLALKPLSLVR
DYALAYLQARTSLAHHIPLQPGRNGMQQLLVFSHLRWDFVYQRPQHVLSRLGQRWPIVFF
EEPVHDPDREAWLEVLQPCIGVTVLRPHSPLADPGFADAQFPVLDALLHAWLAEHGEPEM
AVWLYTPMALPLLQSLQPVAIIYDCMDQLGAFKDAPERLMDRERTLLDIAGVVFTGGPSL
YDAKHPHNPNVVCFPSSVDVAHFAQARRERDPAARAAAPRLGFFGVLDERLDLPLLDALA
TAHPGWEIDLVGPVVKIDPQSLPRAANLHYLGQRGYDELPALIAGWDVCLLPFALNASTA
YISPTKTLEYMAARKPVVSTAVRDVIRLYADGVQVAVSSEDFIAACDAALGERETTRRNR
IADQDRLTSATSWDQTADAMAECIFDTVKAGLSPRAALYLAGGQVVRIEEAPVACLILGA
GPTGLSAAYHYGAGSVLVEKEQTVGGWCRSLDDQGFRFDHAGHIMFSNDATVLRLYQTLL
GDNLHWQNREAWVYSKGVHTRYPFQGALYGLPPAVLKECLVGAIEARFGPITATGTPAGL
PAANAAARAEPVPKRAAPADCCADGTVMADITEGDPKDAASGVNVASMARSGPPANFEEF
IYQVWGAGVAKHFAVPYNTKLWTVPLHEMETSWLGGRVPLPDLQEMIEGALEPVAAPVGP
NARFGYPLKGGFQALMDGFLPLLEGKLSLGRRVSAVSVRRREVSFADGQRMRWQHLVSTL
PLPEFIALMGDEAPERVRLAAGGLRHVSVRCVNLGVGRADLTDKHWIYYPEDTIFHRIFV
QGNASPHNNPPGGFGLTCEITYSPTKPLPLDGDALIARCIRECVEVGMLRAEDPILTTSI
VDMPYAYVLYDHARAANVDTIRSWLLTHDIELAGRYSEWEYYNSDHAFLAGRRAAGNVQA
SLTKRRAGAT