PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057507783.1 NCBI__GCF_001431535.1:WP_057507783.1 (554 amino acids)

SeqID: WP_057507783.1 NCBI__GCF_001431535.1:WP_057507783.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128916: fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057507783.1 NCBI__GCF_001431535.1:WP_057507783.1
MSSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGSGKSTVLKIMAGVDNDF
EGEARPQAGIKVGYLAQEPELDPTKTVRESVEEGVGEVLQAQAALDAVYLAYAEEGADFD
KLAKEQERLEAILAAGDAHTLENQLDVAADALRLPPWEAIVGTLSGGEKRRVALCRLLLQ
KPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIP
WKGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQS
VDYQKRNETNEIFIPPGERLGNAVMEFKNVSKKFGDRLLFDNLNFLVPGGAIVGIIGPNG
AGKSTLFKMITGQEKPDTGEIVVGPTVKLSYVDQSRDALEGNHNVFQEIAGGLDILNING
VEIQSRAYIGRFNFKGQDQQKLVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIET
LRALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMG
DDAAPKRLRFKALK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory