PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057508577.1 NCBI__GCF_001431535.1:WP_057508577.1 (555 amino acids)

SeqID: WP_057508577.1 NCBI__GCF_001431535.1:WP_057508577.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597595: pyoverdine synthetase D [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057508577.1 NCBI__GCF_001431535.1:WP_057508577.1
MPDTPRSSPMTYQRAVDDFNLHDWESRLHGDLQDGINACVECCDRHCGSDRLALRWISTD
GGLHLYTFEDLRAASTRVAHVLTAQGIGRGDVVAGMLPRTPELLATILGTWRVGAVYQPL
FTAFGAKAIESRLRTGRTRLVVTDHANRHKLDDVEDCPPVATILPAGQPADAADIDWRVR
IAAAGAAPFEPVLLRGDELMVLLSTSGTTGAPKGVPVPLRALMSFASYMQLAVDLRPGDV
FWNIADPGWAYGLYYAVIGPLMLGEATTFNEAPFTVQGLHEVIERLGVTNLAGSPTAYRQ
IIAAGEASAARVAGQLRAVSSAGEPLNAEIARWFAAHLSTTVLDHYGQTETGMVVNNHHA
LHHAVRTGSSGFAMPGYRVAVLDDDGHELPARTPGILAIDIARSPLMWFTGYYGADTPAI
GDGYYLTGDTVECEDDGSISFIGRSDDVITSSGYRIGPFDVESALLEHPAVAEAVVIGVP
DPQRTEIVKAFVITSTGIEGDAALAAQLQQYVKTRLSAHAYPRLVEFVSEVPKTPSGKVQ
RFVLRAAEVARQAGQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory