PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_068174298.1 NCBI__GCF_001592305.1:WP_068174298.1 (523 amino acids)

SeqID: WP_068174298.1 NCBI__GCF_001592305.1:WP_068174298.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932465: Sulfoacetaldehyde acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_068174298.1 NCBI__GCF_001592305.1:WP_068174298.1
MTNRKDMTGADALLAALADEGVTVCFANPGTTELDLVRSLEREERMRCVVGLQENVCTGG
ADGYGRMTGRPAATLLHLGPGFANGIANLHNARRAHTPIVNLIGDHTSWHLPYDSPLTSD
IESLARPVSGWVHRIAAVEQSDAAGREAVKQSLARGGQGATLIFPADHQAHTGGEQVALQ
QPAADVGAEVPAAFDPVAAVQRLKAANRIVFLLGGGGELSGLGVRAQKAVQRLCAALGAT
AYAETFPSRSERGQGLPAFDRLPYFPEPAREVLDPADLVVLVGALPPVTYFGYEGHPSLL
VPAERLLKLAAVGDDAATRLEQVADLLGAVEVAIPVAVLSPPEEGPLTPARIALALANEL
PERAIVSVEGGTCGYPFYAVSAAARPHTTLTNTGGAIGQGLPVAMGAAIACPNRQVVALL
SDGSTQYTIQTLWSLAHEDLDVVVLIAANHQYAILRNELRRGGAVLGNRAAEITSLDKPR
IDWVTLAQSYGVPGGRATTSSELTALLRQAFAKRGPMLIEMAL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory