PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_083442071.1 NCBI__GCF_000969705.1:WP_083442071.1 (1207 amino acids)

SeqID: WP_083442071.1 NCBI__GCF_000969705.1:WP_083442071.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_083442071.1 NCBI__GCF_000969705.1:WP_083442071.1
MVLDGAMGTSLQDADLTADDFGSSDLEGCNEILVDTRPDVVEAVHRSFLEVGCDAVETDT
FGGAPWVLDEYGLGDRTEELNEKAALLARAAADAYSTPDRPRFVIGSIGPGTRSPTLSLG
KDPATTKDFIDVPTMEDGYRRQIRALLDGGTDVIWIETSFDLLQIKAAVAAANDVFEERG
SRVPLAVQFTIEKDINTMLLGTEPLAALAALDPLSLDLLGMNCATGPEDMREHVRTLSRA
SRLPLSVLPNAGMPELIDGATVYPLDPAGLAQAQREFVTDLGVSIVGGCCGTTPDHIAAV
VEAVADLAPRPRVLDRPDQAKPGFAGSLVLPDASGGRPMEGPGGAPAPTPVTVEYRPSLA
SLYSAVPLEQDTAFLAIGERANANGSKAFREILLAEDWDGTVALAKSQTREGAHVLDVCV
DYVGREGAPDMIEVVDRYATQSTLPLVIDSTQSDVVEAALLRLGGRAVINSVNLEDGRNK
ADLLLPLAKRYGAAVVVLAIDEEGQARTADWKVQVSQRVAEIAIDEFGLEPQDLIFDCLT
FPLGSGQEDLRRDALETLEAIERISQLIPGCGTTLGVSNVSFGLSAAARQVLNSVFLKEA
VDRGLTSAIVHPGKILPLHRIPDEQVATALDLVHDRRGEAGTSEGAATQGAKYDPLHHFM
ALFEGEVEQDDREELASLPIDQRLHRRIVDGEREGLEADLDEALADTPPLDIINTHLLGG
MKEVGQLFASGAMQLPFVLQSAEAMKTAVAYLEPHIEASGGGSSNKGSIVLATVKGDVHD
IGKNLVDIILRNNGYEVHNLGIKQPIDTILHAAEEHGVDAIGMSGLLVKSTVIMKDNLEE
MNVRGLARYPVLLGGAALTRGYVEDDLRAIYEGQVFYCKDAFEGLSVLDTVMAGDDPAAE
IPEGFGERRERRKPTRQRAPEAPPAVDAQGRPRSTVATDVDVPAPPFWGQRVVRGVPVDE
VAPLLNEVALFRNQWGFGPGDGSPDEYAQLLEEKARPVLREWLARAKAEKVITPEVVYGY
YPANGDGDDLVVWHPDAPLQRELVRFAFPRQDRGRFLNIGDFFRPVDSGEVDVLGVQVVT
MGHRISEVAQDLFAQDRYQDYLFAHGFGVEMAEALAELWHRRIREELGIAGHDGPTPQDW
FRQGYRGSRYSFGYAACPDLEMQEQLFELVDPSQIGVELTEEFMLHPEQSTSAIVVHHPE
AKYFNAR