PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_086508722.1 NCBI__GCF_002151265.1:WP_086508722.1 (463 amino acids)

SeqID: WP_086508722.1 NCBI__GCF_002151265.1:WP_086508722.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 11135401: Soluble pyridine nucleotide transhydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_086508722.1 NCBI__GCF_002151265.1:WP_086508722.1
MAVHNYDVVVIGTGPAGESAAINAAKHGKRVAVVEKQPVLGGNCTHWGTIPSKALRHQVK
QIMQFNTNRMFRDIGEPRWFSFPKVMERSRMTIDQQVEMRTKFYARNRIDLYSGVARFKD
EHTLLVRDRQEALEELVAQKIIIATGSRPYRPADINFRHPRIYDSDTILSLSHTPRTLVI
FGAGVIGCEYASIFSGLGVKVDLINNRDRLLSFLDDEISDALSYHLRKHGVLIRHNEEYE
RVEGDESGVVVYLKSGKKLRADAFLWANGRTGNTDELGLENIGLEANGRGQLQVDDHYRT
AIPHIYAAGDVIGWPSLASAAYDQGLNACDELLERDYRFVNEVPTGIYTIPEISSFGRTE
RELTEAKVPYEVAQAFFKDTARAQITGDTVGMLKILFHQDTLEIYGIHCFGDQASEIVHI
GQAVMQQKGEANTLKYFVNTTFNYPTMAEAYRVAAQNGLNRVF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory