PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_086510737.1 NCBI__GCF_002151265.1:WP_086510737.1 (530 amino acids)

SeqID: WP_086510737.1 NCBI__GCF_002151265.1:WP_086510737.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_086510737.1 NCBI__GCF_002151265.1:WP_086510737.1
MNDTRPTNAASDVTGAETGLPLALCRVAIDTYRENVAYLHRECDLYRAEGFQALSKVEVR
ANGKRILATLNVVDDVAIVGHTQLGLSEDAFALLGVAEGHPVSVSQAEPPASIPALRRKI
AGERLSRQDFREIVQDIAELRYSKIELTAFVVACELGELDREEVFYLSDAMGRVGRRLDW
HEHPVVDKHCIGGIPGNRTSMLVVPIVAAHGLLCPKTSSRAITSPSGTADTMEVLAKVEV
PFDELGELVRTHRGCVAWGGTSELSPADDVLIAVERPLSIDSPGQMVASILSKKIAAGST
HLLLDIPVGPHAKVRSMPEARRLRKLFEFVAGRMGLVLDVVITDGSQPIGRGIGPVLEAR
DVMRVLTNHPDAPMDLRQKSLRLAGRMLEFDPDIRGGDGFGIARDILDSGRALEKMQAII
RAQGEKPFDLDDPELAPHRFEVLAPQAGVVTAIDNLRLARIARLAGAPKARGAGVDLLAR
IGDRVEQGQPLYRVHAAYRSEHGFALQCSERDSGFDIGQPDEIQRLNVEF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory