PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on YP_002827150.1 NCBI__GCF_000018545.1:YP_002827150.1 (300 amino acids)

SeqID: YP_002827150.1 NCBI__GCF_000018545.1:YP_002827150.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67469239: N-acetylneuraminate lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>YP_002827150.1 NCBI__GCF_000018545.1:YP_002827150.1
MAHDLRSALTGISGILVTPYDAKGEIDPARQKAIVDKAIAAGVQILVANGNTGEFYALTI
EEAEIMVRAAAEHVAGRVPLLAGVGRGVRDACRLARNSRAAGAAALMIHQPPDPFSAPRG
LVDYVKAVSDAAEGLPTVLYLRNDAIGIKAIRELCELPSVIGVKWATPNPLKLAEAIGAT
DPGIVWVGGLAEVWAPAFYAVGARGFTSGLINVWPQRSVAIHAALEEGDYREANRLIARM
RAFEDIRAEEMNGTNVTGVKAALAAIGYDCGATRPPSAWPLTGAQQTALQDFIKSNGIRF