PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 11135123_241_454 (214 amino acids)

SeqID: 11135123_241_454 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>11135123_241_454
GWRLLWDGKTTAGWRKFNTDAFPSAGWAVQDGVLKVLSSHQDSTRKGGDLISNEQFSNFE
LELDFKVTKGANSGLKYFVQEDRKSKSTAGLGPEFQILDDQNHPDAKAGVGGNRTTGSLY
DLIAAENLSEGTAEKRMNPPGKWNKLRIVSNNGHVEHWLNNLKMVEYDRHSQIFRSLIAK
SKYSPHPKFGQAPAGHILLQDHHDEVHYRSIKIR